CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.303 rna-evm.model.Chr12.303 Chr12 8499959 8501959 PREDICTED: Interferon-induced very large GTPase 1 nan K11782
gene-evm.TU.Chr12.304 rna-evm.model.Chr12.304 Chr12 8502243 8502830 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K19131
gene-evm.TU.Chr12.305 rna-evm.model.Chr12.305 Chr12 8502836 8503324 PREDICTED: Interferon-induced very large GTPase 1 nan nan
gene-evm.TU.Chr12.307 rna-evm.model.Chr12.307 Chr12 8535310 8538885 PREDICTED: Sarcoplasmic calcium-binding protein nan nan
gene-evm.TU.Chr12.308 rna-evm.model.Chr12.308 Chr12 8542559 8545939 PREDICTED: Sarcoplasmic calcium-binding protein nan K15825
gene-evm.TU.Chr12.309 rna-evm.model.Chr12.309 Chr12 8549104 8549953 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K23838
gene-evm.TU.Chr12.31 rna-evm.model.Chr12.31 Chr12 995904 996530 PREDICTED: Transposon TX1 uncharacterized 149 kDa protein nan K01142
gene-evm.TU.Chr12.310 rna-evm.model.Chr12.310 Chr12 8552919 8553350 PREDICTED: Sarcoplasmic calcium-binding protein nan K19695
gene-evm.TU.Chr12.311 rna-evm.model.Chr12.311 Chr12 8560786 8573883 PREDICTED: Sarcoplasmic calcium-binding protein nan K14684
gene-evm.TU.Chr12.312 rna-evm.model.Chr12.312 Chr12 8573920 8574180 PREDICTED: Sarcoplasmic calcium-binding protein nan K15825

For more detailed data, you can explore the Download section to access the full dataset.