CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.293 rna-evm.model.Chr12.293 Chr12 8068653 8077053 uncharacterized protein nan K08767
gene-evm.TU.Chr12.294 rna-evm.model.Chr12.294.2 Chr12 8119571 8178021 PREDICTED: Ankyrin and armadillo repeat-containing protein GO:0005515 K08332
gene-evm.TU.Chr12.296 rna-evm.model.Chr12.296 Chr12 8187802 8189050 PREDICTED: Galaxin nan K19636
gene-evm.TU.Chr12.297 rna-evm.model.Chr12.297 Chr12 8226739 8236572 PREDICTED: Galaxin nan K19636
gene-evm.TU.Chr12.299 rna-evm.model.Chr12.299 Chr12 8284323 8287695 uncharacterized protein nan K19636
gene-evm.TU.Chr12.3 rna-evm.model.Chr12.3 Chr12 96212 107692 PREDICTED: Gamma-aminobutyric acid type B receptor subunit 1 GO:0004930;GO:0004965;GO:0007186;GO:0016020 K04615
gene-evm.TU.Chr12.30 rna-evm.model.Chr12.30 Chr12 898860 915377 PREDICTED: 60S ribosomal protein L27 GO:0003735;GO:0005840;GO:0006412 K02901
gene-evm.TU.Chr12.300 rna-evm.model.Chr12.300 Chr12 8343461 8377171 PREDICTED: Sentrin-specific protease 1 GO:0006508;GO:0008234 K08592
gene-evm.TU.Chr12.301 rna-evm.model.Chr12.301 Chr12 8475176 8485592 PREDICTED: Interferon-induced very large GTPase 1 GO:0003676;GO:0005525 K12797
gene-evm.TU.Chr12.302 rna-evm.model.Chr12.302 Chr12 8491369 8491942 PREDICTED: meiosis-specific with OB domain-containing protein [EC:3.1.-.-] nan K18585

For more detailed data, you can explore the Download section to access the full dataset.