CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1676 rna-evm.model.Chr1.1676 Chr1 53119449 53126025 PREDICTED: Serine/threonine-protein kinase PLK4 GO:0004672;GO:0004674;GO:0005524;GO:0005814;GO:0006468;GO:0007099 K08863
gene-evm.TU.Chr1.1677 rna-evm.model.Chr1.1677 Chr1 53128360 53134964 PREDICTED: Serine/threonine-protein kinase PLK4 GO:0005515 K08863
gene-evm.TU.Chr1.168 rna-evm.model.Chr1.168 Chr1 5470632 5474902 PREDICTED: LPXTG cell wall anchor domain-containing protein nan nan
gene-evm.TU.Chr1.1681 rna-evm.model.Chr1.1681 Chr1 53177095 53178198 uncharacterized protein nan nan
gene-evm.TU.Chr1.1682 rna-evm.model.Chr1.1682 Chr1 53179628 53181738 PREDICTED: inner nuclear membrane protein Man1 nan K02434
gene-evm.TU.Chr1.1683 rna-evm.model.Chr1.1683 Chr1 53183646 53247770 PREDICTED: Transmembrane protein KIAA1109 nan K24964
gene-evm.TU.Chr1.1684 rna-evm.model.Chr1.1684 Chr1 53281717 53400387 PREDICTED: Transmembrane protein KIAA1109 homolog nan K24964
gene-evm.TU.Chr1.1685 rna-evm.model.Chr1.1685 Chr1 53437117 53449985 PREDICTED: Urea-proton symporter DUR3 GO:0016020;GO:0022857;GO:0055085 K20989
gene-evm.TU.Chr1.1687 rna-evm.model.Chr1.1687 Chr1 53496369 53499128 PREDICTED: Serine/threonine-protein kinase PLK4 GO:0005515 K08863
gene-evm.TU.Chr1.1688 rna-evm.model.Chr1.1688 Chr1 53546632 53548503 PREDICTED: NLR family CARD domain-containing protein 3 nan nan

For more detailed data, you can explore the Download section to access the full dataset.