CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.274 rna-evm.model.Chr12.274 Chr12 7758893 7812321 PREDICTED: Transmembrane protein 98 nan K25292
gene-evm.TU.Chr12.275 rna-evm.model.Chr12.275 Chr12 7838621 7838947 PREDICTED: Putative apoptosis inhibitor ORF99 nan K16061
gene-evm.TU.Chr12.279 rna-evm.model.Chr12.279 Chr12 7843489 7843911 PREDICTED: tripartite motif-containing protein 2/3 nan K26041
gene-evm.TU.Chr12.28 rna-evm.model.Chr12.28.2 Chr12 848924 897065 PREDICTED: Ceramide synthase 5 GO:0003677;GO:0016020 K23727
gene-evm.TU.Chr12.283 rna-evm.model.Chr12.283 Chr12 7858662 7886067 uncharacterized protein nan K22288
gene-evm.TU.Chr12.284 rna-evm.model.Chr12.284 Chr12 7868554 7872378 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.286 rna-evm.model.Chr12.286 Chr12 7909489 7910683 uncharacterized protein nan K10804
gene-evm.TU.Chr12.288 rna-evm.model.Chr12.288 Chr12 7941298 7943907 PREDICTED: Ectin (Fragment) nan K16857
gene-evm.TU.Chr12.290 rna-evm.model.Chr12.290 Chr12 7993120 8007570 PREDICTED: complement component 4 nan nan
gene-evm.TU.Chr12.292 rna-evm.model.Chr12.292 Chr12 8048718 8049038 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.