CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.252 rna-evm.model.Chr12.252 Chr12 7235185 7235634 PREDICTED: inactive dipeptidyl peptidase 10 nan nan
gene-evm.TU.Chr12.253 rna-evm.model.Chr12.253 Chr12 7244180 7264948 uncharacterized protein nan K17253
gene-evm.TU.Chr12.254 rna-evm.model.Chr12.254 Chr12 7267200 7312293 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K24498
gene-evm.TU.Chr12.257 rna-evm.model.Chr12.257 Chr12 7361690 7382649 PREDICTED: MFS transporter, FHS family, Na+ dependent glucose transporter 1 nan K08175
gene-evm.TU.Chr12.259 rna-evm.model.Chr12.259 Chr12 7413811 7418928 PREDICTED: Major facilitator superfamily domain-containing protein 4A GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr12.260 rna-evm.model.Chr12.260 Chr12 7422158 7426058 PREDICTED: Matrix metalloproteinase-19 GO:0004222;GO:0006508;GO:0008237;GO:0008270;GO:0031012 K07998
gene-evm.TU.Chr12.261 rna-evm.model.Chr12.261 Chr12 7458433 7470452 PREDICTED: Solute carrier family 40 member 1 GO:0005381;GO:0016020;GO:0034755 K14685
gene-evm.TU.Chr12.262 rna-evm.model.Chr12.262 Chr12 7472712 7474178 PREDICTED: Alpha-(1,3)-fucosyltransferase C GO:0006486;GO:0008417;GO:0016020 K14464
gene-evm.TU.Chr12.263 rna-evm.model.Chr12.263 Chr12 7479443 7497236 PREDICTED: tenascin nan K19438
gene-evm.TU.Chr12.264 rna-evm.model.Chr12.264 Chr12 7510275 7514766 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.