CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.265 rna-evm.model.Chr12.265 Chr12 7522418 7537246 PREDICTED: Receptor-interacting serine/threonine-protein kinase 4 GO:0005515 K21442
gene-evm.TU.Chr12.266 rna-evm.model.Chr12.266 Chr12 7539839 7542574 uncharacterized protein GO:0003824;GO:0009058 K00969
gene-evm.TU.Chr12.267 rna-evm.model.Chr12.267 Chr12 7544443 7547931 PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog GO:0006488;GO:0016758 K07432
gene-evm.TU.Chr12.268 rna-evm.model.Chr12.268.1 Chr12 7565563 7570901 PREDICTED: Pyridoxine-5'-phosphate oxidase GO:0004733;GO:0008615;GO:0010181 K00275
gene-evm.TU.Chr12.269 rna-evm.model.Chr12.269 Chr12 7577127 7582244 uncharacterized protein nan nan
gene-evm.TU.Chr12.27 rna-evm.model.Chr12.27 Chr12 841213 852780 PREDICTED: 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase GO:0016787;GO:0016831 K03392
gene-evm.TU.Chr12.270 rna-evm.model.Chr12.270 Chr12 7602597 7687376 uncharacterized protein nan K06746
gene-evm.TU.Chr12.271 rna-evm.model.Chr12.271 Chr12 7693310 7704897 PREDICTED: Actin-related protein 2/3 complex subunit 2-B GO:0005885;GO:0015629;GO:0030833;GO:0034314 K05758
gene-evm.TU.Chr12.272 rna-evm.model.Chr12.272 Chr12 7714327 7738903 PREDICTED: Sterol regulatory element-binding protein cleavage-activating protein GO:0000139;GO:0005515;GO:0005789;GO:0032933;GO:0032934 K26682
gene-evm.TU.Chr12.273 rna-evm.model.Chr12.273 Chr12 7743379 7757020 PREDICTED: Zinc finger CW-type PWWP domain protein 2 GO:0003677;GO:0008270 K24690

For more detailed data, you can explore the Download section to access the full dataset.