CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.239 rna-evm.model.Chr12.239 Chr12 6905214 6974503 PREDICTED: Fucolectin-7 GO:0005509;GO:0005576;GO:0006030;GO:0008061 K24470
gene-evm.TU.Chr12.240 rna-evm.model.Chr12.240 Chr12 6974831 6976039 PREDICTED: Dynein heavy chain (Fragment) nan K12384
gene-evm.TU.Chr12.241 rna-evm.model.Chr12.241 Chr12 6980748 6991528 PREDICTED: Protein PIF GO:0005576;GO:0006030;GO:0008061 nan
gene-evm.TU.Chr12.242 rna-evm.model.Chr12.242 Chr12 6994602 7021415 PREDICTED: Late secretory pathway protein AVL9 homolog nan nan
gene-evm.TU.Chr12.243 rna-evm.model.Chr12.243 Chr12 7021960 7024575 PREDICTED: Collagen-like protein 2 nan K24355
gene-evm.TU.Chr12.244 rna-evm.model.Chr12.244 Chr12 7058828 7066599 PREDICTED: testis-expressed sequence 12 protein nan K19537
gene-evm.TU.Chr12.245 rna-evm.model.Chr12.245 Chr12 7072321 7085409 uncharacterized protein nan K23489
gene-evm.TU.Chr12.246 rna-evm.model.Chr12.246 Chr12 7104653 7105432 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr12.248 rna-evm.model.Chr12.248 Chr12 7114100 7116924 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K23879
gene-evm.TU.Chr12.25 rna-evm.model.Chr12.25 Chr12 824035 826829 PREDICTED: Beta-hexosaminidase GO:0004553;GO:0004563;GO:0005975 K12373

For more detailed data, you can explore the Download section to access the full dataset.