CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.227 rna-evm.model.Chr12.227 Chr12 6683832 6711748 PREDICTED: NACHT and WD repeat domain-containing protein 2 GO:0005515 K24734
gene-evm.TU.Chr12.228 rna-evm.model.Chr12.228 Chr12 6714246 6725103 PREDICTED: selectin, platele nan nan
gene-evm.TU.Chr12.229 rna-evm.model.Chr12.229 Chr12 6732969 6767099 PREDICTED: Mitogen-activated protein kinase kinase kinase 20 GO:0000186;GO:0004672;GO:0004709;GO:0005515;GO:0005524;GO:0006468 K04424
gene-evm.TU.Chr12.231 rna-evm.model.Chr12.231 Chr12 6793530 6818085 PREDICTED: BMP and activin membrane-bound inhibitor nan K10162
gene-evm.TU.Chr12.232 rna-evm.model.Chr12.232.1 Chr12 6822602 6842040 PREDICTED: Protein PIF GO:0005576;GO:0006030;GO:0008061 K13198
gene-evm.TU.Chr12.233 rna-evm.model.Chr12.233 Chr12 6843407 6844370 PREDICTED: polyadenylate-binding protein nan K24489
gene-evm.TU.Chr12.234 rna-evm.model.Chr12.234 Chr12 6863196 6865416 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K01624
gene-evm.TU.Chr12.235 rna-evm.model.Chr12.235 Chr12 6865437 6866024 PREDICTED: Protein FAM186A nan K02720
gene-evm.TU.Chr12.237 rna-evm.model.Chr12.237 Chr12 6860124 6879939 PREDICTED: Protein PIF GO:0005576;GO:0006030;GO:0008061 nan
gene-evm.TU.Chr12.238 rna-evm.model.Chr12.238 Chr12 6883139 6892719 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 5 nan K00710

For more detailed data, you can explore the Download section to access the full dataset.