CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.217 rna-evm.model.Chr12.217.1 Chr12 6393770 6413895 PREDICTED: Solute carrier family 35 member F5 GO:0016020;GO:0016020 K15289
gene-evm.TU.Chr12.218 rna-evm.model.Chr12.218 Chr12 6417825 6421807 PREDICTED: Protein LSM12 homolog nan K23643
gene-evm.TU.Chr12.219 rna-evm.model.Chr12.219 Chr12 6427873 6445344 PREDICTED: Proteasome activator complex subunit 3 GO:0008537 K06698
gene-evm.TU.Chr12.22 rna-evm.model.Chr12.22 Chr12 806472 808310 PREDICTED: Complement C1q tumor necrosis factor-related protein 4 nan K24236
gene-evm.TU.Chr12.220 rna-evm.model.Chr12.220 Chr12 6457202 6503110 PREDICTED: Excitatory amino acid transporter 1 GO:0015293;GO:0016020 K05617
gene-evm.TU.Chr12.221 rna-evm.model.Chr12.221 Chr12 6509607 6525353 PREDICTED: RING finger protein nhl-1 GO:0005515 K12035
gene-evm.TU.Chr12.222 rna-evm.model.Chr12.222 Chr12 6535136 6576096 PREDICTED: Telomerase reverse transcriptase GO:0003677;GO:0003721;GO:0003964 K11126
gene-evm.TU.Chr12.224 rna-evm.model.Chr12.224 Chr12 6595097 6595432 uncharacterized protein nan nan
gene-evm.TU.Chr12.225 rna-evm.model.Chr12.225 Chr12 6615332 6626439 PREDICTED: Growth/differentiation factor 8 GO:0008083 K22679
gene-evm.TU.Chr12.226 rna-evm.model.Chr12.226 Chr12 6623692 6655060 PREDICTED: Protein Abitram nan K14712

For more detailed data, you can explore the Download section to access the full dataset.