CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.212 rna-evm.model.Chr12.212 Chr12 6228717 6251433 PREDICTED: Aldehyde dehydrogenase family 16 member A1 GO:0016491;GO:0055114 K00128
gene-evm.TU.Chr12.2123 rna-evm.model.Chr12.2123 Chr12 69258402 69259527 uncharacterized protein nan K03196
gene-evm.TU.Chr12.2126 rna-evm.model.Chr12.2126 Chr12 69261823 69263807 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr12.2129 rna-evm.model.Chr12.2129 Chr12 69319473 69321976 PREDICTED: Mucin-1 GO:0000226;GO:0005516;GO:0005874;GO:0008017 K10432
gene-evm.TU.Chr12.213 rna-evm.model.Chr12.213 Chr12 6260326 6290701 PREDICTED: Serine/threonine-protein kinase 17A GO:0004672;GO:0005524;GO:0006468 K08804
gene-evm.TU.Chr12.2130 rna-evm.model.Chr12.2130 Chr12 69341723 69359490 PREDICTED: Poly(U)-specific endoribonuclease-D GO:0004521 K14648
gene-evm.TU.Chr12.2132 rna-evm.model.Chr12.2132 Chr12 69383414 69383785 PREDICTED: 5-hydroxytryptamine receptor 3A GO:0004888;GO:0005216;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.214 rna-evm.model.Chr12.214 Chr12 6314336 6359602 PREDICTED: Integrin beta-1 GO:0005515 K06589
gene-evm.TU.Chr12.215 rna-evm.model.Chr12.215 Chr12 6368847 6370219 PREDICTED: timeless nan K11446
gene-evm.TU.Chr12.216 rna-evm.model.Chr12.216 Chr12 6371368 6385313 PREDICTED: Protein DBF4 homolog A GO:0003676;GO:0008270 K06629

For more detailed data, you can explore the Download section to access the full dataset.