CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.2104 rna-evm.model.Chr12.2104 Chr12 68918023 68918502 uncharacterized protein nan nan
gene-evm.TU.Chr12.2105 rna-evm.model.Chr12.2105 Chr12 68919253 68921226 uncharacterized protein nan K09292
gene-evm.TU.Chr12.2106 rna-evm.model.Chr12.2106 Chr12 68921444 68922513 uncharacterized protein nan K09427
gene-evm.TU.Chr12.2108 rna-evm.model.Chr12.2108 Chr12 68965289 68966934 PREDICTED: Cholecystokinin receptor type A GO:0004930;GO:0007186;GO:0016020 K04238
gene-evm.TU.Chr12.211 rna-evm.model.Chr12.211 Chr12 6202753 6214301 PREDICTED: Ubiquitin carboxyl-terminal hydrolase MINDY-3 nan K22647
gene-evm.TU.Chr12.2111 rna-evm.model.Chr12.2111 Chr12 69007545 69009555 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0005515;GO:0051260 K21917
gene-evm.TU.Chr12.2113 rna-evm.model.Chr12.2113 Chr12 69014549 69015340 PREDICTED: Ligand-gated ion channel 4 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.2114 rna-evm.model.Chr12.2114 Chr12 69110816 69112896 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.2116 rna-evm.model.Chr12.2116 Chr12 69137370 69137854 PREDICTED: galactose-3-O-sulfotransferase 4 [EC:2.8.2.-] nan K17561
gene-evm.TU.Chr12.2119 rna-evm.model.Chr12.2119 Chr12 69209953 69214907 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.