CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.208 rna-evm.model.Chr12.208 Chr12 6188078 6191519 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr12.2080 rna-evm.model.Chr12.2080 Chr12 68337491 68341548 PREDICTED: Protein HGH1 homolog nan K24124
gene-evm.TU.Chr12.2081 rna-evm.model.Chr12.2081 Chr12 68345427 68360433 PREDICTED: Corepressor interacting with RBPJ 1 GO:0003714 K06066
gene-evm.TU.Chr12.2082 rna-evm.model.Chr12.2082 Chr12 68364669 68376157 PREDICTED: Proteasome subunit beta type-3 GO:0004298;GO:0005839;GO:0019774;GO:0043161;GO:0051603 K02735
gene-evm.TU.Chr12.209_evm.TU.Chr12.210 rna-evm.model.Chr12.209_evm.model.Chr12.210 Chr12 6192927 6200463 PREDICTED: Solute carrier family 23 member 2 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.2090 rna-evm.model.Chr12.2090 Chr12 68531925 68533881 PREDICTED: putative DNA polymerase nan nan
gene-evm.TU.Chr12.2094 rna-evm.model.Chr12.2094 Chr12 68537245 68540458 PREDICTED: Uncharacterized protein F54H12.2 GO:0055114 nan
gene-evm.TU.Chr12.2097 rna-evm.model.Chr12.2097 Chr12 68621157 68638244 PREDICTED: deleted in malignant brain tumors 1 protein nan K09892
gene-evm.TU.Chr12.2101 rna-evm.model.Chr12.2101 Chr12 68803050 68808290 PREDICTED: Cerebrin prohormone nan K15547
gene-evm.TU.Chr12.2103 rna-evm.model.Chr12.2103 Chr12 68910657 68917619 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan nan

For more detailed data, you can explore the Download section to access the full dataset.