CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.2066 rna-evm.model.Chr12.2066 Chr12 67986014 67993282 PREDICTED: cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.2069 rna-evm.model.Chr12.2069 Chr12 68123365 68134831 PREDICTED: transforming growth factor 2 protein, partial GO:0008083 K22688
gene-evm.TU.Chr12.2070 rna-evm.model.Chr12.2070 Chr12 68145058 68146539 PREDICTED: Protein ALP1-like nan K23222
gene-evm.TU.Chr12.2072 rna-evm.model.Chr12.2072 Chr12 68165119 68165727 PREDICTED: Ficolin-2 nan K25409
gene-evm.TU.Chr12.2073 rna-evm.model.Chr12.2073 Chr12 68181885 68184604 PREDICTED: Microfibril-associated glycoprotein 4 nan K25409
gene-evm.TU.Chr12.2074 rna-evm.model.Chr12.2074 Chr12 68260563 68261254 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr12.2075 rna-evm.model.Chr12.2075 Chr12 68289198 68296446 PREDICTED: ubiquitin carboxyl-terminal hydrolase 26/29/37 [EC:3.4.19.12] nan K13717
gene-evm.TU.Chr12.2076 rna-evm.model.Chr12.2076 Chr12 68302139 68303496 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr12.2077_evm.TU.Chr12.2079 rna-evm.model.Chr12.2077_evm.model.Chr12.2079 Chr12 68308011 68323177 PREDICTED: Gem-associated protein 2 nan K13130
gene-evm.TU.Chr12.2078 rna-evm.model.Chr12.2078 Chr12 68321431 68322375 PREDICTED: Ovarian abundant message protein nan K07782

For more detailed data, you can explore the Download section to access the full dataset.