CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.2040 rna-evm.model.Chr12.2040 Chr12 67010670 67019374 PREDICTED: Ficolin-1 nan K25409
gene-evm.TU.Chr12.2041 rna-evm.model.Chr12.2041 Chr12 67025445 67027823 PREDICTED: Microfibril-associated glycoprotein 4 nan K25409
gene-evm.TU.Chr12.2042 rna-evm.model.Chr12.2042 Chr12 67128746 67134264 PREDICTED: Proteasome subunit beta type-3 GO:0004298;GO:0005839;GO:0019774;GO:0043161;GO:0051603 K02735
gene-evm.TU.Chr12.2043 rna-evm.model.Chr12.2043 Chr12 67169904 67189821 PREDICTED: Corepressor interacting with RBPJ 1 GO:0003714 K06066
gene-evm.TU.Chr12.2044 rna-evm.model.Chr12.2044 Chr12 67191796 67199616 PREDICTED: Protein HGH1 homolog nan K24124
gene-evm.TU.Chr12.2045 rna-evm.model.Chr12.2045 Chr12 67215513 67232329 PREDICTED: Gem-associated protein 2 nan K13130
gene-evm.TU.Chr12.2046 rna-evm.model.Chr12.2046 Chr12 67236806 67238363 PREDICTED: Inositol phosphoceramide mannosyltransferase 3 nan K22721
gene-evm.TU.Chr12.2048 rna-evm.model.Chr12.2048 Chr12 67426260 67427246 uncharacterized protein nan nan
gene-evm.TU.Chr12.2049 rna-evm.model.Chr12.2049 Chr12 67506885 67509524 PREDICTED: fibrillin 2/3 nan K20394
gene-evm.TU.Chr12.205 rna-evm.model.Chr12.205 Chr12 6165794 6175203 PREDICTED: BRCA1-associated RING domain protein 1 GO:0005515 K10683

For more detailed data, you can explore the Download section to access the full dataset.