CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.2029 rna-evm.model.Chr12.2029 Chr12 66170287 66206651 PREDICTED: Parathyroid hormone/parathyroid hormone-related peptide receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04585
gene-evm.TU.Chr12.203 rna-evm.model.Chr12.203 Chr12 6082586 6104875 PREDICTED: Elongator complex protein 2 GO:0002098;GO:0005515;GO:0033588 K11374
gene-evm.TU.Chr12.2031 rna-evm.model.Chr12.2031 Chr12 66341937 66342761 PREDICTED: codanin-1 nan K10395
gene-evm.TU.Chr12.2032 rna-evm.model.Chr12.2032 Chr12 66369402 66372717 uncharacterized protein nan nan
gene-evm.TU.Chr12.2035 rna-evm.model.Chr12.2035 Chr12 66689176 66689802 PREDICTED: Zinc finger MYM-type protein 2 nan K24675
gene-evm.TU.Chr12.2036 rna-evm.model.Chr12.2036 Chr12 66722530 66723429 PREDICTED: Protein unc-13 homolog C nan K26456
gene-evm.TU.Chr12.2037 rna-evm.model.Chr12.2037 Chr12 66822469 66825066 PREDICTED: Spindlin-Z GO:0007276 K21548
gene-evm.TU.Chr12.2038 rna-evm.model.Chr12.2038 Chr12 66856291 66856827 PREDICTED: Ficolin-2 nan K25409
gene-evm.TU.Chr12.2039 rna-evm.model.Chr12.2039 Chr12 66873552 66874319 PREDICTED: Fibrinogen C domain-containing protein 1 nan K25409
gene-evm.TU.Chr12.204 rna-evm.model.Chr12.204 Chr12 6120842 6160056 PREDICTED: E3 ubiquitin-protein ligase HECW2 GO:0005515 K12168

For more detailed data, you can explore the Download section to access the full dataset.