CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.2011 rna-evm.model.Chr12.2011 Chr12 64727794 64752407 PREDICTED: Fibropellin-1 GO:0005509;GO:0005515 K20994
gene-evm.TU.Chr12.2015 rna-evm.model.Chr12.2015 Chr12 65357334 65363357 PREDICTED: Calcitonin receptor GO:0004930;GO:0004948;GO:0016020 K04585
gene-evm.TU.Chr12.2017 rna-evm.model.Chr12.2017 Chr12 65631578 65644674 PREDICTED: Parathyroid hormone/parathyroid hormone-related peptide receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04585
gene-evm.TU.Chr12.2018 rna-evm.model.Chr12.2018 Chr12 65688947 65700714 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan nan
gene-evm.TU.Chr12.2019 rna-evm.model.Chr12.2019 Chr12 65723588 65746553 PREDICTED: Histone-lysine N-methyltransferase set-1 GO:0005515 K11428
gene-evm.TU.Chr12.202 rna-evm.model.Chr12.202 Chr12 6038438 6053258 PREDICTED: Protein white GO:0005524;GO:0016020;GO:0016887 K21396
gene-evm.TU.Chr12.2022 rna-evm.model.Chr12.2022 Chr12 65800442 65801395 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr12.2025 rna-evm.model.Chr12.2025 Chr12 66076954 66077328 uncharacterized protein nan nan
gene-evm.TU.Chr12.2027 rna-evm.model.Chr12.2027 Chr12 66105196 66106266 uncharacterized protein nan nan
gene-evm.TU.Chr12.2028 rna-evm.model.Chr12.2028 Chr12 66146768 66147637 PREDICTED: exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-] nan K17928

For more detailed data, you can explore the Download section to access the full dataset.