CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.2001 rna-evm.model.Chr12.2001 Chr12 64416272 64558625 PREDICTED: Receptor-type tyrosine-protein phosphatase N2 nan K07817
gene-evm.TU.Chr12.2002 rna-evm.model.Chr12.2002 Chr12 64569336 64574733 PREDICTED: Polyprenol reductase GO:0003865;GO:0006488;GO:0006629;GO:0016627 K12345
gene-evm.TU.Chr12.2003 rna-evm.model.Chr12.2003 Chr12 64580728 64585320 PREDICTED: Replication protein A 14 kDa subunit GO:0003677;GO:0005634;GO:0006260;GO:0006281;GO:0006310 K10740
gene-evm.TU.Chr12.2004 rna-evm.model.Chr12.2004 Chr12 64587210 64591084 PREDICTED: usherin nan K05637
gene-evm.TU.Chr12.2005 rna-evm.model.Chr12.2005 Chr12 64592550 64594433 PREDICTED: Collagen alpha-1(II) chain nan K24521
gene-evm.TU.Chr12.2006 rna-evm.model.Chr12.2006 Chr12 64602801 64618891 PREDICTED: RNA-binding protein 45 GO:0003676 K25081
gene-evm.TU.Chr12.2007 rna-evm.model.Chr12.2007 Chr12 64622490 64622648 PREDICTED: RNA-binding protein 45 GO:0003676 K25081
gene-evm.TU.Chr12.2008 rna-evm.model.Chr12.2008 Chr12 64628977 64638526 PREDICTED: Cell division cycle protein 123 homolog nan K13739
gene-evm.TU.Chr12.2009 rna-evm.model.Chr12.2009 Chr12 64665191 64683701 PREDICTED: Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 GO:0016020;GO:0016263;GO:0016266;GO:0016757 K00731
gene-evm.TU.Chr12.2010 rna-evm.model.Chr12.2010 Chr12 64703405 64712638 PREDICTED: Cholecystokinin receptor type A GO:0004930;GO:0007186;GO:0016020 K04238

For more detailed data, you can explore the Download section to access the full dataset.