CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1980 rna-evm.model.Chr12.1980 Chr12 63989130 64001495 PREDICTED: Neurotrypsin GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr12.1982 rna-evm.model.Chr12.1982 Chr12 64051114 64061763 PREDICTED: Complement receptor type 2 nan K24469
gene-evm.TU.Chr12.1983 rna-evm.model.Chr12.1983 Chr12 64064127 64066205 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0051260 K21917
gene-evm.TU.Chr12.1984 rna-evm.model.Chr12.1984 Chr12 64081137 64082967 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0051260 K21917
gene-evm.TU.Chr12.1985 rna-evm.model.Chr12.1985 Chr12 64132606 64144975 PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal GO:0016747 K07513
gene-evm.TU.Chr12.1986 rna-evm.model.Chr12.1986 Chr12 64160222 64167081 PREDICTED: Transmembrane protein 177 nan K07628
gene-evm.TU.Chr12.1987 rna-evm.model.Chr12.1987 Chr12 64167319 64174201 PREDICTED: Transmembrane protein 177 nan nan
gene-evm.TU.Chr12.1988 rna-evm.model.Chr12.1988 Chr12 64187126 64189423 PREDICTED: Insoluble matrix shell protein 3 nan K06265
gene-evm.TU.Chr12.1989 rna-evm.model.Chr12.1989.1 Chr12 64200376 64223539 PREDICTED: Sterol O-acyltransferase 1 GO:0008374 K00637
gene-evm.TU.Chr12.1990 rna-evm.model.Chr12.1990 Chr12 64234952 64235665 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.