CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1992 rna-evm.model.Chr12.1992 Chr12 64270924 64272792 PREDICTED: Interferon-inducible GTPase 5 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr12.1993 rna-evm.model.Chr12.1993 Chr12 64283064 64293796 PREDICTED: CD109 antigen nan K12768
gene-evm.TU.Chr12.1994 rna-evm.model.Chr12.1994 Chr12 64301944 64317960 uncharacterized protein nan nan
gene-evm.TU.Chr12.1995 rna-evm.model.Chr12.1995 Chr12 64327159 64342472 uncharacterized protein nan K19077
gene-evm.TU.Chr12.1996 rna-evm.model.Chr12.1996 Chr12 64346571 64347305 PREDICTED: 14-3-3 protein beta/alpha-A GO:0019904 K16197
gene-evm.TU.Chr12.1997 rna-evm.model.Chr12.1997 Chr12 64349758 64351892 PREDICTED: 14-3-3-like protein 1 GO:0019904 K16197
gene-evm.TU.Chr12.1998_evm.TU.Chr12.1999 rna-evm.model.Chr12.1998_evm.model.Chr12.1999 Chr12 64356365 64373038 PREDICTED: Heparan-alpha-glucosaminide N-acetyltransferase GO:0005765;GO:0015019 K10532
gene-evm.TU.Chr12.20 rna-evm.model.Chr12.20 Chr12 613354 614308 uncharacterized protein nan nan
gene-evm.TU.Chr12.200 rna-evm.model.Chr12.200 Chr12 5956425 5984593 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0022848;GO:0034220;GO:0045211 K05312
gene-evm.TU.Chr12.2000 rna-evm.model.Chr12.2000 Chr12 64375515 64376650 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K21406

For more detailed data, you can explore the Download section to access the full dataset.