CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1967 rna-evm.model.Chr12.1967 Chr12 63691621 63692214 uncharacterized protein nan K20194
gene-evm.TU.Chr12.1969 rna-evm.model.Chr12.1969 Chr12 63693582 63694742 PREDICTED: ryanodine receptor 1 nan K04763
gene-evm.TU.Chr12.197 rna-evm.model.Chr12.197 Chr12 5810554 5811232 PREDICTED: Tigger transposable element-derived protein 4 nan K11496
gene-evm.TU.Chr12.1972 rna-evm.model.Chr12.1972 Chr12 63795319 63795931 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr12.1973 rna-evm.model.Chr12.1973 Chr12 63801695 63807583 uncharacterized protein nan nan
gene-evm.TU.Chr12.1975 rna-evm.model.Chr12.1975 Chr12 63893869 63894356 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan K01142
gene-evm.TU.Chr12.1977 rna-evm.model.Chr12.1977 Chr12 63962748 63976302 PREDICTED: COMM domain-containing protein 3 GO:0006814 K22559
gene-evm.TU.Chr12.1978 rna-evm.model.Chr12.1978 Chr12 63980206 63982878 PREDICTED: Tubulin alpha-1A chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr12.1979 rna-evm.model.Chr12.1979 Chr12 63984576 63986915 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K23284
gene-evm.TU.Chr12.198 rna-evm.model.Chr12.198 Chr12 5811884 5812263 uncharacterized protein nan K11496

For more detailed data, you can explore the Download section to access the full dataset.