CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1945 rna-evm.model.Chr12.1945 Chr12 63110352 63118738 PREDICTED: Histidine protein methyltransferase 1 homolog nan K18803
gene-evm.TU.Chr12.1946 rna-evm.model.Chr12.1946 Chr12 63118839 63134971 PREDICTED: General transcription factor 3C polypeptide 4 nan K11310
gene-evm.TU.Chr12.1947 rna-evm.model.Chr12.1947 Chr12 63135860 63141919 PREDICTED: unconventional myosin-XVIIIa-like GO:0005515;GO:0007165 K02373
gene-evm.TU.Chr12.1948 rna-evm.model.Chr12.1948 Chr12 63166164 63189513 PREDICTED: Methyltransferase-like protein 6 nan K00599
gene-evm.TU.Chr12.1949 rna-evm.model.Chr12.1949 Chr12 63189849 63199547 PREDICTED: ELL-associated factor 1 GO:0006355;GO:0032783 K15186
gene-evm.TU.Chr12.195 rna-evm.model.Chr12.195 Chr12 5788765 5792509 PREDICTED: E3 ubiquitin-protein ligase TRIM56 GO:0008270 K12026
gene-evm.TU.Chr12.1951 rna-evm.model.Chr12.1951 Chr12 63222760 63223958 uncharacterized protein nan K23722
gene-evm.TU.Chr12.1956 rna-evm.model.Chr12.1956 Chr12 63389471 63445629 PREDICTED: Zinc finger CCCH domain-containing protein 10 GO:0046872 K14404
gene-evm.TU.Chr12.1957 rna-evm.model.Chr12.1957 Chr12 63506547 63507223 uncharacterized protein nan nan
gene-evm.TU.Chr12.196 rna-evm.model.Chr12.196 Chr12 5797115 5804240 PREDICTED: Neurofilament heavy polypeptide GO:0005515 K24521

For more detailed data, you can explore the Download section to access the full dataset.