CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1928 rna-evm.model.Chr12.1928 Chr12 62433029 62441160 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr12.193 rna-evm.model.Chr12.193 Chr12 5764947 5769781 uncharacterized protein nan K20694
gene-evm.TU.Chr12.1930 rna-evm.model.Chr12.1930 Chr12 62585808 62588370 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr12.1931 rna-evm.model.Chr12.1931 Chr12 62616052 62616927 PREDICTED: Allatostatin-A receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr12.1934 rna-evm.model.Chr12.1934 Chr12 62717182 62718057 PREDICTED: Allatostatin-A receptor GO:0004930;GO:0007186;GO:0016020 K04194
gene-evm.TU.Chr12.1935 rna-evm.model.Chr12.1935 Chr12 62807590 62811470 PREDICTED: hemicentin nan K06467
gene-evm.TU.Chr12.1937 rna-evm.model.Chr12.1937 Chr12 62830611 62862944 PREDICTED: Parathyroid hormone/parathyroid hormone-related peptide receptor GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04585
gene-evm.TU.Chr12.194 rna-evm.model.Chr12.194 Chr12 5771581 5786275 uncharacterized protein nan nan
gene-evm.TU.Chr12.1941 rna-evm.model.Chr12.1941 Chr12 62919477 62925617 PREDICTED: G-protein coupled receptor Mth2 GO:0004888;GO:0004930;GO:0007166;GO:0007186;GO:0016020 K04599
gene-evm.TU.Chr12.1943 rna-evm.model.Chr12.1943 Chr12 63008693 63023369 PREDICTED: tripartite motif-containing protein 71 [EC:2.3.2.27] nan K11696

For more detailed data, you can explore the Download section to access the full dataset.