CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1905 rna-evm.model.Chr12.1905 Chr12 61899423 61906314 PREDICTED: Interferon-induced protein 44-like GO:0005525 K10429
gene-evm.TU.Chr12.1906 rna-evm.model.Chr12.1906 Chr12 61908793 61929688 PREDICTED: General transcription and DNA repair factor IIH helicase subunit XPB GO:0003677;GO:0005524;GO:0016787 K10843
gene-evm.TU.Chr12.1907 rna-evm.model.Chr12.1907 Chr12 61934821 61937115 PREDICTED: Zinc finger protein 862 GO:0046983 K24642
gene-evm.TU.Chr12.1908 rna-evm.model.Chr12.1908 Chr12 61934059 61947594 PREDICTED: Interferon-inducible double-stranded RNA-dependent protein kinase activator A homolog A nan K18420
gene-evm.TU.Chr12.1909 rna-evm.model.Chr12.1909 Chr12 61955091 61959163 PREDICTED: Troponin C, skeletal muscle GO:0005509 K05865
gene-evm.TU.Chr12.191 rna-evm.model.Chr12.191 Chr12 5746705 5751065 uncharacterized protein nan K24521
gene-evm.TU.Chr12.1910 rna-evm.model.Chr12.1910 Chr12 61963271 61967050 PREDICTED: Protein yellow nan K22203
gene-evm.TU.Chr12.1911 rna-evm.model.Chr12.1911.1 Chr12 61978468 62040178 PREDICTED: Disintegrin and metalloproteinase domain-containing protein 22 GO:0004222;GO:0006508 K06835
gene-evm.TU.Chr12.1912 rna-evm.model.Chr12.1912 Chr12 62043800 62047250 PREDICTED: Cytochrome c, somatic A GO:0009055;GO:0020037 K08738
gene-evm.TU.Chr12.1915 rna-evm.model.Chr12.1915 Chr12 62062979 62071778 PREDICTED: Ras-related protein Rab-18 GO:0003924;GO:0005525 K07910

For more detailed data, you can explore the Download section to access the full dataset.