CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1896 rna-evm.model.Chr12.1896 Chr12 61773148 61797863 PREDICTED: Probable hydrolase PNKD nan K23864
gene-evm.TU.Chr12.1897 rna-evm.model.Chr12.1897 Chr12 61800907 61802214 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.1898 rna-evm.model.Chr12.1898 Chr12 61807481 61808788 PREDICTED: Neuronal acetylcholine receptor subunit alpha-6 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.1899 rna-evm.model.Chr12.1899 Chr12 61816443 61817702 PREDICTED: Neuronal acetylcholine receptor subunit alpha-9-II GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.19 rna-evm.model.Chr12.19 Chr12 544856 574545 PREDICTED: Calcitonin receptor GO:0004888;GO:0004930;GO:0004948;GO:0007166;GO:0007186;GO:0016020;GO:0016020 K04576
gene-evm.TU.Chr12.190 rna-evm.model.Chr12.190.1 Chr12 5737133 5743276 PREDICTED: CCR4-NOT transcription complex subunit 1 nan K24521
gene-evm.TU.Chr12.1901 rna-evm.model.Chr12.1901 Chr12 61825221 61826519 PREDICTED: Neuronal acetylcholine receptor subunit alpha-9-II GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.1902 rna-evm.model.Chr12.1902 Chr12 61834051 61835145 PREDICTED: protein kinase D [EC:2.7.11.13] nan K09855
gene-evm.TU.Chr12.1903 rna-evm.model.Chr12.1903 Chr12 61835298 61840892 PREDICTED: Interferon-induced protein 44-like GO:0005525 K10429
gene-evm.TU.Chr12.1904 rna-evm.model.Chr12.1904 Chr12 61845867 61867165 PREDICTED: Hemicentin-1 GO:0005044;GO:0016020 K13912

For more detailed data, you can explore the Download section to access the full dataset.