CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1886 rna-evm.model.Chr12.1886 Chr12 61217774 61418328 PREDICTED: DNA mismatch repair protein Mlh1 GO:0005524;GO:0006298;GO:0016887;GO:0030983;GO:0032300 K08734
gene-evm.TU.Chr12.1887 rna-evm.model.Chr12.1887 Chr12 61464596 61561615 PREDICTED: Histone deacetylase 4 nan K11406
gene-evm.TU.Chr12.1888 rna-evm.model.Chr12.1888 Chr12 61625072 61631802 PREDICTED: Homeobox protein BarH-like 1b GO:0003677 K09361
gene-evm.TU.Chr12.1889 rna-evm.model.Chr12.1889 Chr12 61666141 61684949 PREDICTED: Rho-related GTP-binding protein RhoE GO:0003924;GO:0005525;GO:0007264 K07859
gene-evm.TU.Chr12.189 rna-evm.model.Chr12.189 Chr12 5726605 5730691 uncharacterized protein nan K24522
gene-evm.TU.Chr12.1890 rna-evm.model.Chr12.1890 Chr12 61690023 61692784 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr12.1892 rna-evm.model.Chr12.1892 Chr12 61712596 61714285 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr12.1893 rna-evm.model.Chr12.1893 Chr12 61719493 61723056 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr12.1894_evm.TU.Chr12.1891 rna-evm.model.Chr12.1894_evm.model.Chr12.1891 Chr12 61697429 61731779 PREDICTED: Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase GO:0008375;GO:0016020 K00727
gene-evm.TU.Chr12.1895 rna-evm.model.Chr12.1895 Chr12 61735792 61757536 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536

For more detailed data, you can explore the Download section to access the full dataset.