CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1873 rna-evm.model.Chr12.1873 Chr12 60304370 60333971 PREDICTED: Probable N-acetylgalactosaminyltransferase 9 nan K00710
gene-evm.TU.Chr12.1875 rna-evm.model.Chr12.1875 Chr12 60503544 60504986 PREDICTED: protein kinase D [EC:2.7.11.13] nan K22804
gene-evm.TU.Chr12.1877 rna-evm.model.Chr12.1877 Chr12 60631618 60632688 PREDICTED: protein kinase D [EC:2.7.11.13] nan K24220
gene-evm.TU.Chr12.1878 rna-evm.model.Chr12.1878 Chr12 60800758 60801168 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr12.188 rna-evm.model.Chr12.188 Chr12 5721770 5723622 PREDICTED: Vitelline membrane outer layer protein 1 homolog nan K25745
gene-evm.TU.Chr12.1880 rna-evm.model.Chr12.1880 Chr12 61124835 61127396 PREDICTED: 5-hydroxytryptamine receptor GO:0004930;GO:0004993;GO:0005886;GO:0007186;GO:0016020 K04153
gene-evm.TU.Chr12.1882 rna-evm.model.Chr12.1882 Chr12 61161447 61162392 uncharacterized protein nan K06142
gene-evm.TU.Chr12.1883 rna-evm.model.Chr12.1883 Chr12 61164542 61171147 PREDICTED: Cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.1884 rna-evm.model.Chr12.1884 Chr12 61178279 61186934 PREDICTED: Transmembrane protein 106B nan K25048
gene-evm.TU.Chr12.1885 rna-evm.model.Chr12.1885 Chr12 61196004 61217455 PREDICTED: Cilia- and flagella-associated protein 221 GO:0003341;GO:0005929;GO:0060271 K25610

For more detailed data, you can explore the Download section to access the full dataset.