CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1854 rna-evm.model.Chr12.1854 Chr12 59666946 59685132 PREDICTED: Ribosome biogenesis protein WDR12 homolog GO:0005515 K14863
gene-evm.TU.Chr12.1855 rna-evm.model.Chr12.1855 Chr12 59695341 59704118 PREDICTED: Inositol polyphosphate 1-phosphatase GO:0046854 K01107
gene-evm.TU.Chr12.1856 rna-evm.model.Chr12.1856 Chr12 59706122 59725412 PREDICTED: Cyclin-dependent kinase 12 GO:0004672;GO:0005524;GO:0006468 K08819
gene-evm.TU.Chr12.1857 rna-evm.model.Chr12.1857 Chr12 59731930 59734079 PREDICTED: Beta-1,3-galactosyltransferase 1 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr12.1858 rna-evm.model.Chr12.1858 Chr12 59737837 59739461 PREDICTED: Slit homolog 3 protein nan K06839
gene-evm.TU.Chr12.1859 rna-evm.model.Chr12.1859 Chr12 59762154 59770561 PREDICTED: proline-rich extensin-like protein EPR1 nan K14398
gene-evm.TU.Chr12.186 rna-evm.model.Chr12.186 Chr12 5690789 5693324 PREDICTED: Vitelline membrane outer layer protein 1 homolog nan K25745
gene-evm.TU.Chr12.1860 rna-evm.model.Chr12.1860 Chr12 59776660 59783194 uncharacterized protein nan K12182
gene-evm.TU.Chr12.1861 rna-evm.model.Chr12.1861 Chr12 59899229 59985695 PREDICTED: inhibin beta B chain nan K22688
gene-evm.TU.Chr12.1862 rna-evm.model.Chr12.1862 Chr12 60013767 60039092 PREDICTED: Inter-alpha-trypsin inhibitor heavy chain H4 nan K07114

For more detailed data, you can explore the Download section to access the full dataset.