CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1839 rna-evm.model.Chr12.1839 Chr12 59215324 59258714 PREDICTED: Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha GO:0016307;GO:0046488 K00920
gene-evm.TU.Chr12.1840 rna-evm.model.Chr12.1840 Chr12 59264063 59286780 PREDICTED: Polypeptide N-acetylgalactosaminyltransferase 11 nan K00710
gene-evm.TU.Chr12.1843 rna-evm.model.Chr12.1843 Chr12 59353485 59356342 PREDICTED: ankyrin repeat domain-containing protein 50 nan K10541
gene-evm.TU.Chr12.1845 rna-evm.model.Chr12.1845 Chr12 59376281 59383944 uncharacterized protein nan nan
gene-evm.TU.Chr12.1846 rna-evm.model.Chr12.1846 Chr12 59387579 59391033 PREDICTED: Perlucin-like protein nan K17513
gene-evm.TU.Chr12.1847 rna-evm.model.Chr12.1847 Chr12 59399501 59407978 PREDICTED: Perlucin-like protein nan K17513
gene-evm.TU.Chr12.1848 rna-evm.model.Chr12.1848 Chr12 59427709 59437866 PREDICTED: Neuropeptide SIFamide receptor GO:0004930;GO:0007186;GO:0016020 K04214
gene-evm.TU.Chr12.185 rna-evm.model.Chr12.185 Chr12 5685892 5688265 PREDICTED: Vitelline membrane outer layer protein 1 nan K25745
gene-evm.TU.Chr12.1852 rna-evm.model.Chr12.1852 Chr12 59555600 59609450 PREDICTED: Rho GTPase-activating protein 21 GO:0005515 K20315
gene-evm.TU.Chr12.1853 rna-evm.model.Chr12.1853 Chr12 59628940 59664020 PREDICTED: RNA-binding protein 12B GO:0003676;GO:0008270 K10137

For more detailed data, you can explore the Download section to access the full dataset.