CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.181 rna-evm.model.Chr12.181 Chr12 5629835 5631478 PREDICTED: Interferon-induced very large GTPase 1 nan nan
gene-evm.TU.Chr12.1810 rna-evm.model.Chr12.1810 Chr12 58071330 58097879 uncharacterized protein nan K06746
gene-evm.TU.Chr12.1814 rna-evm.model.Chr12.1814 Chr12 58271839 58284404 PREDICTED: solute carrier family 6 (neurotransmitter transporter, serotonin) member 4 nan K19894
gene-evm.TU.Chr12.1815 rna-evm.model.Chr12.1815 Chr12 58286667 58290412 PREDICTED: Low affinity immunoglobulin epsilon Fc receptor nan K10059
gene-evm.TU.Chr12.1816 rna-evm.model.Chr12.1816 Chr12 58297879 58301283 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K24586
gene-evm.TU.Chr12.1819 rna-evm.model.Chr12.1819 Chr12 58522550 58530707 PREDICTED: Calpain-10 nan K08579
gene-evm.TU.Chr12.182 rna-evm.model.Chr12.182 Chr12 5631511 5644725 PREDICTED: Interferon-induced very large GTPase 1 GO:0005525 K12797
gene-evm.TU.Chr12.1820 rna-evm.model.Chr12.1820 Chr12 58591458 58611784 PREDICTED: Calpain-10 nan K08579
gene-evm.TU.Chr12.1822 rna-evm.model.Chr12.1822 Chr12 58668711 58679781 uncharacterized protein nan K18723
gene-evm.TU.Chr12.1825 rna-evm.model.Chr12.1825 Chr12 58714361 58764558 PREDICTED: Secernin-2 GO:0006508;GO:0016805 K14358

For more detailed data, you can explore the Download section to access the full dataset.