CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1798 rna-evm.model.Chr12.1798 Chr12 57159630 57162270 uncharacterized protein nan nan
gene-evm.TU.Chr12.18 rna-evm.model.Chr12.18 Chr12 452837 475521 PREDICTED: Interferon-induced protein 44-like GO:0005525 K06946
gene-evm.TU.Chr12.1800 rna-evm.model.Chr12.1800 Chr12 57278793 57279659 PREDICTED: reverse transcriptase family protein, partial nan nan
gene-evm.TU.Chr12.1801 rna-evm.model.Chr12.1801 Chr12 57390071 57390658 PREDICTED: p24 family protein gamma-2 nan K23285
gene-evm.TU.Chr12.1803 rna-evm.model.Chr12.1803 Chr12 57511620 57514993 uncharacterized protein nan nan
gene-evm.TU.Chr12.1804 rna-evm.model.Chr12.1804 Chr12 57515118 57516455 uncharacterized protein nan K23873
gene-evm.TU.Chr12.1806 rna-evm.model.Chr12.1806 Chr12 57542310 57542765 PREDICTED: protein kinase D [EC:2.7.11.13] nan nan
gene-evm.TU.Chr12.1807 rna-evm.model.Chr12.1807 Chr12 57720090 57722063 PREDICTED: sentrin-specific protease 1 [EC:3.4.22.68] nan nan
gene-evm.TU.Chr12.1808 rna-evm.model.Chr12.1808 Chr12 57722181 57722486 uncharacterized protein nan K08987
gene-evm.TU.Chr12.1809 rna-evm.model.Chr12.1809 Chr12 58027594 58029927 PREDICTED: starch-binding domain-containing protein 1 nan nan

For more detailed data, you can explore the Download section to access the full dataset.