CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1785 rna-evm.model.Chr12.1785 Chr12 56916871 56918646 PREDICTED: carcinoembryonic antigen-related cell adhesion molecule nan K06748
gene-evm.TU.Chr12.1786 rna-evm.model.Chr12.1786 Chr12 56920118 56925436 uncharacterized protein nan K06790
gene-evm.TU.Chr12.1787 rna-evm.model.Chr12.1787 Chr12 56931321 56941124 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr12.179 rna-evm.model.Chr12.179 Chr12 5591744 5612052 PREDICTED: Speckle targeted PIP5K1A-regulated poly(A) polymerase GO:0003676;GO:0003730;GO:0005634;GO:0006378;GO:0050265 K18709
gene-evm.TU.Chr12.1790 rna-evm.model.Chr12.1790 Chr12 57017318 57023845 uncharacterized protein GO:0003676 K19484
gene-evm.TU.Chr12.1792 rna-evm.model.Chr12.1792 Chr12 57083061 57083471 PREDICTED: Aggrecan core protein nan K10164
gene-evm.TU.Chr12.1793 rna-evm.model.Chr12.1793 Chr12 57087578 57103562 PREDICTED: COMM domain-containing protein 10 nan K22566
gene-evm.TU.Chr12.1794 rna-evm.model.Chr12.1794 Chr12 57105565 57105945 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.1795 rna-evm.model.Chr12.1795 Chr12 57109233 57123759 PREDICTED: 3-ketoacyl-CoA thiolase A, peroxisomal GO:0016747 K07513
gene-evm.TU.Chr12.1797 rna-evm.model.Chr12.1797 Chr12 57138787 57155544 PREDICTED: transmembrane protein 177-like nan nan

For more detailed data, you can explore the Download section to access the full dataset.