CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1773 rna-evm.model.Chr12.1773 Chr12 56640675 56683473 PREDICTED: Sorting nexin-13 GO:0035091 K17925
gene-evm.TU.Chr12.1774 rna-evm.model.Chr12.1774 Chr12 56687706 56690617 PREDICTED: Helix-loop-helix protein 13 GO:0046983 K09073
gene-evm.TU.Chr12.1775 rna-evm.model.Chr12.1775 Chr12 56700846 56722997 PREDICTED: Nostrin GO:0005515 K20126
gene-evm.TU.Chr12.1776 rna-evm.model.Chr12.1776 Chr12 56737147 56753170 PREDICTED: Protein wos2 nan K15730
gene-evm.TU.Chr12.1777 rna-evm.model.Chr12.1777 Chr12 56778480 56798239 PREDICTED: ATP-binding cassette sub-family F member 2 GO:0005524;GO:0016887 K06185
gene-evm.TU.Chr12.1778 rna-evm.model.Chr12.1778 Chr12 56821840 56824490 PREDICTED: aquaporin rerated protein, invertebrate nan K09884
gene-evm.TU.Chr12.1780 rna-evm.model.Chr12.1780 Chr12 56845452 56846399 PREDICTED: protein kinase D [EC:2.7.11.13] nan K22804
gene-evm.TU.Chr12.1781 rna-evm.model.Chr12.1781 Chr12 56852233 56852457 PREDICTED: aquaporin rerated protein, invertebrate nan K09884
gene-evm.TU.Chr12.1782 rna-evm.model.Chr12.1782 Chr12 56852720 56888241 PREDICTED: aquaporin rerated protein, invertebrate nan K09884
gene-evm.TU.Chr12.1784 rna-evm.model.Chr12.1784 Chr12 56890635 56899660 PREDICTED: Hemicentin-2 nan K17341

For more detailed data, you can explore the Download section to access the full dataset.