CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1740 rna-evm.model.Chr12.1740 Chr12 55261018 55296090 PREDICTED: Dynein heavy chain (Fragment) nan K14997
gene-evm.TU.Chr12.1741 rna-evm.model.Chr12.1741 Chr12 55297438 55309079 PREDICTED: Putative sodium-coupled neutral amino acid transporter 11 nan K14997
gene-evm.TU.Chr12.1742 rna-evm.model.Chr12.1742 Chr12 55319995 55449548 PREDICTED: A-kinase anchor protein 9 GO:0003677;GO:0007165;GO:0060090 K16551
gene-evm.TU.Chr12.1743 rna-evm.model.Chr12.1743 Chr12 55451290 55457660 PREDICTED: golgin subfamily B member 1 nan K14996
gene-evm.TU.Chr12.1746 rna-evm.model.Chr12.1746 Chr12 55526333 55529643 uncharacterized protein nan K23083
gene-evm.TU.Chr12.1747 rna-evm.model.Chr12.1747 Chr12 55537146 55540738 PREDICTED: Tigger transposable element-derived protein 6 GO:0003676 K14960
gene-evm.TU.Chr12.1748 rna-evm.model.Chr12.1748 Chr12 55536168 55574132 PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase GO:0004672;GO:0004674;GO:0005524;GO:0006468;GO:0035556 K08835
gene-evm.TU.Chr12.1749 rna-evm.model.Chr12.1749 Chr12 55580887 55591950 PREDICTED: Uncharacterized protein F54F2.2, isoform a nan K23588
gene-evm.TU.Chr12.1750 rna-evm.model.Chr12.1750 Chr12 55593495 55609323 PREDICTED: Protein AF-10 nan K23588
gene-evm.TU.Chr12.1751 rna-evm.model.Chr12.1751 Chr12 55611013 55621323 PREDICTED: Ras-related GTP-binding protein A GO:0005525 K16185

For more detailed data, you can explore the Download section to access the full dataset.