CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1731 rna-evm.model.Chr12.1731 Chr12 55018291 55029301 PREDICTED: Thrombospondin type-1 domain-containing protein 1 nan K24433
gene-evm.TU.Chr12.1732 rna-evm.model.Chr12.1732 Chr12 55029485 55047298 PREDICTED: Integral membrane protein GPR155 GO:0016020;GO:0035556;GO:0055085 K13936
gene-evm.TU.Chr12.1733 rna-evm.model.Chr12.1733.1 Chr12 55055685 55096184 PREDICTED: Telomere-associated protein RIF1 nan K11138
gene-evm.TU.Chr12.1734 rna-evm.model.Chr12.1734 Chr12 55105956 55106498 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:3.6.4.-] nan nan
gene-evm.TU.Chr12.1735 rna-evm.model.Chr12.1735 Chr12 55121003 55160565 PREDICTED: Putative phosphoenolpyruvate synthase GO:0005524;GO:0016301;GO:0016310;GO:0016772 K22579
gene-evm.TU.Chr12.1736 rna-evm.model.Chr12.1736 Chr12 55170990 55183467 PREDICTED: Reticulophagy regulator 3 nan K23880
gene-evm.TU.Chr12.1737 rna-evm.model.Chr12.1737 Chr12 55187130 55202132 PREDICTED: Tubulin gamma-1 chain GO:0000930;GO:0003924;GO:0005874;GO:0007017;GO:0007020;GO:0031122 K10389
gene-evm.TU.Chr12.1738 rna-evm.model.Chr12.1738 Chr12 55206132 55214443 PREDICTED: 60S ribosomal protein L37a GO:0003735;GO:0005840;GO:0006412 K02921
gene-evm.TU.Chr12.1739 rna-evm.model.Chr12.1739 Chr12 55210698 55240842 PREDICTED: Zinc finger protein 622 GO:0003676;GO:0008270 K14816
gene-evm.TU.Chr12.174 rna-evm.model.Chr12.174 Chr12 5517140 5549549 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.