CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1674 rna-evm.model.Chr12.1674 Chr12 53602240 53603362 PREDICTED: dynein heavy chain, axonemal nan K26555
gene-evm.TU.Chr12.1675 rna-evm.model.Chr12.1675 Chr12 53605050 53608098 PREDICTED: Dynein heavy chain 14, axonemal GO:0003777;GO:0007018 K26555
gene-evm.TU.Chr12.1677 rna-evm.model.Chr12.1677 Chr12 53628005 53629920 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.1679 rna-evm.model.Chr12.1679 Chr12 53660220 53662658 uncharacterized protein nan nan
gene-evm.TU.Chr12.168 rna-evm.model.Chr12.168 Chr12 5116646 5148907 PREDICTED: Sodium/potassium/calcium exchanger 4 GO:0016020;GO:0055085 K13752
gene-evm.TU.Chr12.1682 rna-evm.model.Chr12.1682 Chr12 53829783 53838665 uncharacterized protein nan K16596
gene-evm.TU.Chr12.1683 rna-evm.model.Chr12.1683 Chr12 53875613 53876740 uncharacterized protein nan K24394
gene-evm.TU.Chr12.1685 rna-evm.model.Chr12.1685 Chr12 53883772 53893116 PREDICTED: lipoprotein nan K10402
gene-evm.TU.Chr12.1686 rna-evm.model.Chr12.1686 Chr12 53894198 53894983 PREDICTED: Probable T4-type lysozyme 1 GO:0003796;GO:0009253;GO:0016998 K26031
gene-evm.TU.Chr12.1687 rna-evm.model.Chr12.1687 Chr12 53900623 53936014 PREDICTED: Zinc finger protein 616 GO:0003676 K09229

For more detailed data, you can explore the Download section to access the full dataset.