CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1701 rna-evm.model.Chr12.1701 Chr12 54176396 54176743 PREDICTED: Xaa-Pro aminopeptidase 2 [EC:3.4.11.9] nan K23222
gene-evm.TU.Chr12.1704 rna-evm.model.Chr12.1704 Chr12 54232532 54248629 PREDICTED: Phospholipase B1, membrane-associated GO:0004620;GO:0016788 K14621
gene-evm.TU.Chr12.1706 rna-evm.model.Chr12.1706 Chr12 54277933 54300178 PREDICTED: vdg3 nan nan
gene-evm.TU.Chr12.1707 rna-evm.model.Chr12.1707 Chr12 54313711 54319348 PREDICTED: vdg3 nan nan
gene-evm.TU.Chr12.1709 rna-evm.model.Chr12.1709 Chr12 54325279 54326286 PREDICTED: protein kinase D [EC:2.7.11.13] nan K07164
gene-evm.TU.Chr12.171 rna-evm.model.Chr12.171 Chr12 5328110 5334575 PREDICTED: Ectoine dioxygenase nan K00477
gene-evm.TU.Chr12.1710 rna-evm.model.Chr12.1710 Chr12 54361512 54361764 PREDICTED: ESCRT-I complex subunit TSG101 nan nan
gene-evm.TU.Chr12.1713 rna-evm.model.Chr12.1713 Chr12 54475108 54477737 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.1714 rna-evm.model.Chr12.1714 Chr12 54515669 54516013 uncharacterized protein nan nan
gene-evm.TU.Chr12.1718 rna-evm.model.Chr12.1718 Chr12 54588993 54644156 uncharacterized protein nan K00791

For more detailed data, you can explore the Download section to access the full dataset.