CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1688 rna-evm.model.Chr12.1688 Chr12 53945687 53946579 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K21406
gene-evm.TU.Chr12.1689 rna-evm.model.Chr12.1689 Chr12 53955960 53966551 PREDICTED: Isatin hydrolase GO:0004061;GO:0019441 K01475
gene-evm.TU.Chr12.1692_evm.TU.Chr12.1691 rna-evm.model.Chr12.1692_evm.model.Chr12.1691 Chr12 53991787 54058614 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 GO:0005515;GO:0016514;GO:0071564;GO:0071565 K11650
gene-evm.TU.Chr12.1694 rna-evm.model.Chr12.1694 Chr12 54060292 54092487 PREDICTED: Cyclin-dependent-like kinase 5 GO:0004672;GO:0005524;GO:0006468 K02090
gene-evm.TU.Chr12.1695 rna-evm.model.Chr12.1695 Chr12 54094596 54098431 PREDICTED: chitin synthase [EC:2.4.1.16] nan nan
gene-evm.TU.Chr12.1696 rna-evm.model.Chr12.1696 Chr12 54100268 54111779 PREDICTED: Trafficking protein particle complex subunit 4 GO:0016192;GO:0030008 K20303
gene-evm.TU.Chr12.1698 rna-evm.model.Chr12.1698 Chr12 54113593 54115740 PREDICTED: Jerky protein homolog-like GO:0003676;GO:0003677 K10750
gene-evm.TU.Chr12.1699 rna-evm.model.Chr12.1699 Chr12 54111873 54147683 PREDICTED: Zinc finger protein 778 GO:0003676;GO:0003677 K22534
gene-evm.TU.Chr12.17 rna-evm.model.Chr12.17 Chr12 377976 396955 PREDICTED: Interferon-induced protein 44-like GO:0005525 K06946
gene-evm.TU.Chr12.1700 rna-evm.model.Chr12.1700 Chr12 54153380 54164379 PREDICTED: Carbohydrate sulfotransferase 2 GO:0008146 K01022

For more detailed data, you can explore the Download section to access the full dataset.