CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1661 rna-evm.model.Chr12.1661 Chr12 53210329 53222587 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842 K22371
gene-evm.TU.Chr12.1665 rna-evm.model.Chr12.1665 Chr12 53313807 53319369 uncharacterized protein GO:0003676 K25794
gene-evm.TU.Chr12.1666 rna-evm.model.Chr12.1666 Chr12 53322575 53339553 PREDICTED: Cell death activator CIDE-B GO:0006915 K25914
gene-evm.TU.Chr12.1667 rna-evm.model.Chr12.1667 Chr12 53409650 53440361 PREDICTED: AF4/FMR2 family member 4 nan K23221
gene-evm.TU.Chr12.1668 rna-evm.model.Chr12.1668 Chr12 53441617 53447016 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr12.167 rna-evm.model.Chr12.167 Chr12 5053086 5057603 PREDICTED: carbohydrate 4-sulfotransferase 9 [EC:2.8.2.-] nan K01017
gene-evm.TU.Chr12.1670 rna-evm.model.Chr12.1670 Chr12 53514161 53544874 PREDICTED: La-related protein 4 nan K18763
gene-evm.TU.Chr12.1671 rna-evm.model.Chr12.1671 Chr12 53567290 53570597 PREDICTED: Integrase/recombinase xerD homolog nan K04763
gene-evm.TU.Chr12.1672 rna-evm.model.Chr12.1672 Chr12 53587311 53588692 PREDICTED: Suppressor of fused homolog GO:0005515 K06229
gene-evm.TU.Chr12.1673 rna-evm.model.Chr12.1673 Chr12 53588998 53601307 PREDICTED: Suppressor of fused homolog GO:0005515 K06229

For more detailed data, you can explore the Download section to access the full dataset.