CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1649 rna-evm.model.Chr12.1649 Chr12 52748915 52771239 PREDICTED: Coiled-coil domain-containing protein 34 nan K16753
gene-evm.TU.Chr12.165 rna-evm.model.Chr12.165 Chr12 5037837 5038868 PREDICTED: Heparan sulfate glucosamine 3-O-sulfotransferase 6 GO:0008146 K01024
gene-evm.TU.Chr12.1650 rna-evm.model.Chr12.1650.5 Chr12 52771431 52874982 PREDICTED: Dynein heavy chain domain-containing protein 1 GO:0003777;GO:0005524;GO:0007018 K26555
gene-evm.TU.Chr12.1652 rna-evm.model.Chr12.1652 Chr12 52921239 52926525 PREDICTED: importin-4 nan nan
gene-evm.TU.Chr12.1653 rna-evm.model.Chr12.1653 Chr12 52932481 52933236 uncharacterized protein nan nan
gene-evm.TU.Chr12.1655 rna-evm.model.Chr12.1655 Chr12 52987180 53006421 uncharacterized protein nan K21754
gene-evm.TU.Chr12.1656 rna-evm.model.Chr12.1656 Chr12 53048100 53052440 uncharacterized protein nan K14192
gene-evm.TU.Chr12.1657 rna-evm.model.Chr12.1657 Chr12 53055356 53068652 PREDICTED: Pogo transposable element with KRAB domain nan K11496
gene-evm.TU.Chr12.166 rna-evm.model.Chr12.166 Chr12 5046504 5047220 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236
gene-evm.TU.Chr12.1660 rna-evm.model.Chr12.1660 Chr12 53204061 53208066 PREDICTED: calcium-responsive transcription factor nan K21595

For more detailed data, you can explore the Download section to access the full dataset.