CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1638 rna-evm.model.Chr12.1638 Chr12 52453248 52471816 PREDICTED: Probable serine carboxypeptidase CPVL GO:0004185;GO:0006508 K09645
gene-evm.TU.Chr12.1639 rna-evm.model.Chr12.1639 Chr12 52547769 52553667 PREDICTED: Probable serine/threonine-protein kinase pats1 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr12.164 rna-evm.model.Chr12.164 Chr12 5017352 5036673 PREDICTED: Double-stranded RNA-specific adenosine deaminase GO:0003723;GO:0004000;GO:0006396 K12968
gene-evm.TU.Chr12.1640 rna-evm.model.Chr12.1640 Chr12 52558077 52575381 PREDICTED: Hydroxyacylglutathione hydrolase, mitochondrial nan K01069
gene-evm.TU.Chr12.1641 rna-evm.model.Chr12.1641 Chr12 52577474 52584937 PREDICTED: Vesicle-trafficking protein SEC22a nan K08520
gene-evm.TU.Chr12.1642 rna-evm.model.Chr12.1642 Chr12 52597202 52602283 uncharacterized protein nan K07554
gene-evm.TU.Chr12.1645 rna-evm.model.Chr12.1645 Chr12 52672343 52673576 uncharacterized protein nan K27287
gene-evm.TU.Chr12.1646 rna-evm.model.Chr12.1646 Chr12 52677179 52708945 PREDICTED: Aprataxin and PNK-like factor GO:0003906;GO:0003950;GO:0006302;GO:0008408 K13295
gene-evm.TU.Chr12.1647 rna-evm.model.Chr12.1647 Chr12 52720409 52742850 PREDICTED: calsequestrin-1-like nan K17547
gene-evm.TU.Chr12.1648 rna-evm.model.Chr12.1648 Chr12 52729426 52732275 PREDICTED: Alpha-scruin GO:0005515 K10447

For more detailed data, you can explore the Download section to access the full dataset.