CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1621 rna-evm.model.Chr12.1621 Chr12 52045548 52046251 PREDICTED: Insoluble matrix shell protein 3 nan nan
gene-evm.TU.Chr12.1623 rna-evm.model.Chr12.1623 Chr12 52139296 52149615 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K16190
gene-evm.TU.Chr12.1627 rna-evm.model.Chr12.1627 Chr12 52200817 52227205 PREDICTED: Calpain-10 nan K08574
gene-evm.TU.Chr12.1629 rna-evm.model.Chr12.1629 Chr12 52231660 52232181 PREDICTED: E1A/CREB-binding protein [EC:2.3.1.48] nan K04083
gene-evm.TU.Chr12.163 rna-evm.model.Chr12.163 Chr12 4993322 5007711 PREDICTED: Dynactin subunit 2 GO:0005869;GO:0007017 K10424
gene-evm.TU.Chr12.1631 rna-evm.model.Chr12.1631 Chr12 52257342 52270704 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr12.1632 rna-evm.model.Chr12.1632 Chr12 52285651 52298946 PREDICTED: Pregnancy-specific beta-1-glycoprotein 5 nan K06500
gene-evm.TU.Chr12.1633 rna-evm.model.Chr12.1633 Chr12 52308275 52356116 PREDICTED: Sialic acid-binding Ig-like lectin 10 nan K17341
gene-evm.TU.Chr12.1634 rna-evm.model.Chr12.1634 Chr12 52362216 52363292 PREDICTED: Transposable element Tc3 transposase nan K07494
gene-evm.TU.Chr12.1637 rna-evm.model.Chr12.1637 Chr12 52431081 52433036 PREDICTED: Probable serine carboxypeptidase CPVL GO:0004185;GO:0006508 K09645

For more detailed data, you can explore the Download section to access the full dataset.