CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.161 rna-evm.model.Chr12.161 Chr12 4967347 4973529 uncharacterized protein nan K10089
gene-evm.TU.Chr12.1610 rna-evm.model.Chr12.1610 Chr12 51816716 51818142 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0005515;GO:0051260 K21917
gene-evm.TU.Chr12.1611 rna-evm.model.Chr12.1611 Chr12 51821367 51823155 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0005515;GO:0051260 K21917
gene-evm.TU.Chr12.1613 rna-evm.model.Chr12.1613 Chr12 51841637 51843905 PREDICTED: cholecystokinin A receptor GO:0016020 K04206
gene-evm.TU.Chr12.1614 rna-evm.model.Chr12.1614 Chr12 51867434 51868177 PREDICTED: Aquaporin-11 nan K09884
gene-evm.TU.Chr12.1616 rna-evm.model.Chr12.1616 Chr12 51969499 51971108 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan nan
gene-evm.TU.Chr12.1617 rna-evm.model.Chr12.1617 Chr12 51971156 51972394 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763
gene-evm.TU.Chr12.1618 rna-evm.model.Chr12.1618 Chr12 51975515 51976182 PREDICTED: Insoluble matrix shell protein 3 nan K06265
gene-evm.TU.Chr12.1619 rna-evm.model.Chr12.1619 Chr12 51986440 51987295 PREDICTED: Insoluble matrix shell protein 3 nan nan
gene-evm.TU.Chr12.162 rna-evm.model.Chr12.162 Chr12 4975234 4986034 PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial nan K03954

For more detailed data, you can explore the Download section to access the full dataset.