CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.16 rna-evm.model.Chr12.16 Chr12 369706 375718 uncharacterized protein nan nan
gene-evm.TU.Chr12.160 rna-evm.model.Chr12.160 Chr12 4955330 4966888 PREDICTED: cation-dependent mannose-6-phosphate receptor nan K10089
gene-evm.TU.Chr12.1600 rna-evm.model.Chr12.1600 Chr12 51622505 51641168 PREDICTED: COMM domain-containing protein 3 GO:0006814 K22559
gene-evm.TU.Chr12.1601 rna-evm.model.Chr12.1601 Chr12 51642044 51644713 PREDICTED: Tubulin alpha-1A chain GO:0003924;GO:0005200;GO:0005525;GO:0005874;GO:0007017 K07374
gene-evm.TU.Chr12.1602 rna-evm.model.Chr12.1602 Chr12 51645099 51650017 PREDICTED: C1q-related factor nan K24237
gene-evm.TU.Chr12.1603 rna-evm.model.Chr12.1603 Chr12 51652127 51664558 PREDICTED: Neurotrypsin GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr12.1604 rna-evm.model.Chr12.1604 Chr12 51669956 51670640 uncharacterized protein nan nan
gene-evm.TU.Chr12.1607 rna-evm.model.Chr12.1607 Chr12 51737858 51745272 PREDICTED: Protein P nan K21037
gene-evm.TU.Chr12.1608 rna-evm.model.Chr12.1608 Chr12 51768827 51796849 PREDICTED: SCO-spondin GO:0007399;GO:0030154 K24434
gene-evm.TU.Chr12.1609 rna-evm.model.Chr12.1609 Chr12 51810420 51815103 PREDICTED: Complement receptor type 2 GO:0016020 K06496

For more detailed data, you can explore the Download section to access the full dataset.