CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1587 rna-evm.model.Chr12.1587 Chr12 51160079 51162461 uncharacterized protein nan nan
gene-evm.TU.Chr12.1588 rna-evm.model.Chr12.1588 Chr12 51241405 51251872 PREDICTED: Eosinophil peroxidase nan K19511
gene-evm.TU.Chr12.1589 rna-evm.model.Chr12.1589 Chr12 51252615 51256471 PREDICTED: conserved Plasmodium protein, unknown function nan K12026
gene-evm.TU.Chr12.159 rna-evm.model.Chr12.159 Chr12 4946232 4948731 PREDICTED: Pancreas transcription factor 1 subunit alpha GO:0046983 K09073
gene-evm.TU.Chr12.1590 rna-evm.model.Chr12.1590 Chr12 51257332 51286334 PREDICTED: Chorion peroxidase nan K19511
gene-evm.TU.Chr12.1594 rna-evm.model.Chr12.1594 Chr12 51344780 51350546 PREDICTED: Peroxidasin nan K19511
gene-evm.TU.Chr12.1596 rna-evm.model.Chr12.1596 Chr12 51398203 51455642 PREDICTED: Chorion peroxidase nan K19511
gene-evm.TU.Chr12.1597 rna-evm.model.Chr12.1597 Chr12 51487774 51497430 PREDICTED: Ras-related protein M-Ras GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07831
gene-evm.TU.Chr12.1598 rna-evm.model.Chr12.1598 Chr12 51502120 51518313 PREDICTED: Protein disulfide-isomerase A4 GO:0045454 K09582
gene-evm.TU.Chr12.1599 rna-evm.model.Chr12.1599 Chr12 51541945 51597796 PREDICTED: Complement C3 (Fragment) GO:0004866;GO:0005615 K03989

For more detailed data, you can explore the Download section to access the full dataset.