CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1497 rna-evm.model.Chr12.1497 Chr12 47390318 47400454 PREDICTED: Acidic mammalian chitinase GO:0005975;GO:0008061 K17523
gene-evm.TU.Chr12.1498 rna-evm.model.Chr12.1498 Chr12 47403689 47406818 uncharacterized protein nan nan
gene-evm.TU.Chr12.1499 rna-evm.model.Chr12.1499 Chr12 47410022 47411329 PREDICTED: Caprin-2 nan K24236
gene-evm.TU.Chr12.150 rna-evm.model.Chr12.150 Chr12 4788203 4803468 PREDICTED: Galactosylceramide sulfotransferase GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019
gene-evm.TU.Chr12.1500 rna-evm.model.Chr12.1500 Chr12 47416206 47425322 PREDICTED: EF-hand calcium-binding domain-containing protein 1 GO:0005509 K27179
gene-evm.TU.Chr12.1502 rna-evm.model.Chr12.1502 Chr12 47455976 47472780 PREDICTED: Formimidoyltransferase-cyclodeaminase GO:0003824;GO:0005542;GO:0016740;GO:0044237 K13990
gene-evm.TU.Chr12.1503 rna-evm.model.Chr12.1503 Chr12 47563640 47565183 PREDICTED: EMILIN-2 nan K23284
gene-evm.TU.Chr12.1504 rna-evm.model.Chr12.1504 Chr12 47578458 47598188 PREDICTED: Cell surface hyaluronidase nan K22144
gene-evm.TU.Chr12.1505 rna-evm.model.Chr12.1505 Chr12 47613943 47619364 PREDICTED: Acetylcholine receptor-like protein cup-4 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr12.1507 rna-evm.model.Chr12.1507 Chr12 47629614 47664810 PREDICTED: Cell surface hyaluronidase GO:0005230;GO:0006811;GO:0016020 K22144

For more detailed data, you can explore the Download section to access the full dataset.