CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1508 rna-evm.model.Chr12.1508 Chr12 47665743 47674908 PREDICTED: Solute carrier family 23 member 1 GO:0016020;GO:0022857;GO:0055085 K14611
gene-evm.TU.Chr12.151 rna-evm.model.Chr12.151 Chr12 4806859 4815966 PREDICTED: Coadhesin (Fragment) nan K08621
gene-evm.TU.Chr12.1510 rna-evm.model.Chr12.1510 Chr12 47737879 47747032 PREDICTED: Nuclease EXOG, mitochondrial GO:0003676;GO:0016787;GO:0046872 K15050
gene-evm.TU.Chr12.1511 rna-evm.model.Chr12.1511 Chr12 47748409 47756668 PREDICTED: Methylmalonic aciduria and homocystinuria type D protein, mitochondrial GO:0009235 K26006
gene-evm.TU.Chr12.1512 rna-evm.model.Chr12.1512 Chr12 47756743 47759564 PREDICTED: UPF0565 protein C2orf69 homolog nan nan
gene-evm.TU.Chr12.1513 rna-evm.model.Chr12.1513 Chr12 47767780 47797690 PREDICTED: Serine/threonine-protein kinase Nek10 GO:0004672;GO:0005515;GO:0005524;GO:0006468 K20879
gene-evm.TU.Chr12.1514 rna-evm.model.Chr12.1514 Chr12 47804326 47812042 PREDICTED: Protein Star nan K16381
gene-evm.TU.Chr12.1515 rna-evm.model.Chr12.1515 Chr12 47827286 47840757 uncharacterized protein nan nan
gene-evm.TU.Chr12.1518 rna-evm.model.Chr12.1518 Chr12 48014088 48023998 PREDICTED: glutamate receptor, ionotropic kainate 4 nan K25917
gene-evm.TU.Chr12.1519 rna-evm.model.Chr12.1519 Chr12 48026526 48027485 PREDICTED: serine/threonine-protein phosphatase 2A regulatory subunit B'' nan K04423

For more detailed data, you can explore the Download section to access the full dataset.