CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1546 rna-evm.model.Chr12.1546 Chr12 48865344 48871274 PREDICTED: potassium large conductance calcium-activated channel subfamily M alpha member 1 nan K13140
gene-evm.TU.Chr12.1547 rna-evm.model.Chr12.1547 Chr12 48894559 48912023 PREDICTED: DNA-directed RNA polymerase I subunit RPA2 GO:0003677;GO:0003899;GO:0006351;GO:0032549 K03002
gene-evm.TU.Chr12.155 rna-evm.model.Chr12.155 Chr12 4926238 4928897 PREDICTED: complement component 4 nan K12894
gene-evm.TU.Chr12.1551 rna-evm.model.Chr12.1551 Chr12 49170175 49170663 PREDICTED: elongation factor Ts nan K10054
gene-evm.TU.Chr12.1552 rna-evm.model.Chr12.1552 Chr12 49320686 49332077 PREDICTED: Solute carrier family 28 member 3 GO:0005337;GO:0016020;GO:1901642 K11536
gene-evm.TU.Chr12.1553 rna-evm.model.Chr12.1553 Chr12 49338568 49339555 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K11433
gene-evm.TU.Chr12.1554 rna-evm.model.Chr12.1554 Chr12 49544895 49546117 PREDICTED: trichohyalin nan K11014
gene-evm.TU.Chr12.1555 rna-evm.model.Chr12.1555 Chr12 49546150 49546677 PREDICTED: Protein unc-13 homolog C nan nan
gene-evm.TU.Chr12.1556 rna-evm.model.Chr12.1556 Chr12 49620946 49626707 PREDICTED: Sarcoplasmic calcium-binding protein nan K10312
gene-evm.TU.Chr12.1557 rna-evm.model.Chr12.1557 Chr12 49684759 49713104 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.