CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1439 rna-evm.model.Chr12.1439 Chr12 46157437 46179011 PREDICTED: Probable ubiquitin carboxyl-terminal hydrolase MINDY-4 nan K22647
gene-evm.TU.Chr12.144 rna-evm.model.Chr12.144 Chr12 4732016 4745955 PREDICTED: D-3-phosphoglycerate dehydrogenase GO:0016616;GO:0051287;GO:0055114 K00058
gene-evm.TU.Chr12.1440 rna-evm.model.Chr12.1440 Chr12 46179202 46213203 PREDICTED: Transmembrane channel-like protein 7 GO:0005886;GO:0016020 K21988
gene-evm.TU.Chr12.1441 rna-evm.model.Chr12.1441 Chr12 46213825 46232998 PREDICTED: LanC-like protein 2 nan K25210
gene-evm.TU.Chr12.1442 rna-evm.model.Chr12.1442 Chr12 46233200 46279592 PREDICTED: Rho GTPase-activating protein 12 GO:0005515;GO:0007165 K20636
gene-evm.TU.Chr12.1444 rna-evm.model.Chr12.1444 Chr12 46294919 46303063 PREDICTED: Insulin-induced gene 2 protein nan K26681
gene-evm.TU.Chr12.1445 rna-evm.model.Chr12.1445 Chr12 46304884 46332104 PREDICTED: Coiled-coil domain-containing protein 93 nan K15712
gene-evm.TU.Chr12.1446 rna-evm.model.Chr12.1446 Chr12 46341306 46367345 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 GO:0005524;GO:0006281;GO:0031297;GO:0036310 K14440
gene-evm.TU.Chr12.1447 rna-evm.model.Chr12.1447 Chr12 46369697 46372100 PREDICTED: importin-4 nan nan
gene-evm.TU.Chr12.1448 rna-evm.model.Chr12.1448 Chr12 46376438 46380095 PREDICTED: Galactose-3-O-sulfotransferase 2 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K01019

For more detailed data, you can explore the Download section to access the full dataset.