CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.1449 rna-evm.model.Chr12.1449 Chr12 46381999 46383082 PREDICTED: tripartite motif-containing protein 39 [EC:2.3.2.27] nan K12026
gene-evm.TU.Chr12.1450 rna-evm.model.Chr12.1450 Chr12 46437557 46439332 PREDICTED: Interferon-inducible GTPase 5 GO:0005525;GO:0016020 K17072
gene-evm.TU.Chr12.1453 rna-evm.model.Chr12.1453 Chr12 46474721 46475392 uncharacterized protein nan nan
gene-evm.TU.Chr12.1455 rna-evm.model.Chr12.1455 Chr12 46488740 46489351 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K14590
gene-evm.TU.Chr12.1457 rna-evm.model.Chr12.1457 Chr12 46507666 46543208 PREDICTED: Complement C5 GO:0004866 K03989
gene-evm.TU.Chr12.1461 rna-evm.model.Chr12.1461 Chr12 46777924 46787184 PREDICTED: ariadne-1 [EC:2.3.2.31] GO:0004842;GO:0016567 K02977
gene-evm.TU.Chr12.1463 rna-evm.model.Chr12.1463 Chr12 46824030 46828106 PREDICTED: AH receptor-interacting protein nan K01020
gene-evm.TU.Chr12.1464 rna-evm.model.Chr12.1464 Chr12 46848209 46853692 PREDICTED: myosin-10 nan K19251
gene-evm.TU.Chr12.1466 rna-evm.model.Chr12.1466 Chr12 46863232 46865342 PREDICTED: collagen, type VIII, alpha nan K23284
gene-evm.TU.Chr12.1467 rna-evm.model.Chr12.1467 Chr12 46870725 46873264 PREDICTED: C1q-related factor nan K23284

For more detailed data, you can explore the Download section to access the full dataset.