CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr12.152 rna-evm.model.Chr12.152 Chr12 4828131 4843640 PREDICTED: Twist-related protein 2 GO:0046983 K09069
gene-evm.TU.Chr12.1522 rna-evm.model.Chr12.1522 Chr12 48213248 48233094 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K12754
gene-evm.TU.Chr12.1523 rna-evm.model.Chr12.1523 Chr12 48240262 48244560 PREDICTED: Calmodulin-like protein 3 GO:0005509 K13448
gene-evm.TU.Chr12.1524 rna-evm.model.Chr12.1524 Chr12 48247015 48253736 PREDICTED: Calmodulin-like protein 5 GO:0005509 K02183
gene-evm.TU.Chr12.1525 rna-evm.model.Chr12.1525 Chr12 48255249 48261455 PREDICTED: Squidulin GO:0005509 K13412
gene-evm.TU.Chr12.1526 rna-evm.model.Chr12.1526 Chr12 48265625 48272604 PREDICTED: Calmodulin-like protein 8 GO:0005509 K02183
gene-evm.TU.Chr12.1527 rna-evm.model.Chr12.1527 Chr12 48277683 48279764 PREDICTED: Calcium-dependent protein kinase 12 GO:0005509 K02183
gene-evm.TU.Chr12.1528 rna-evm.model.Chr12.1528 Chr12 48289963 48298216 PREDICTED: Acidic mammalian chitinase GO:0005975;GO:0008061 K17523
gene-evm.TU.Chr12.1529 rna-evm.model.Chr12.1529 Chr12 48301118 48304215 uncharacterized protein nan nan
gene-evm.TU.Chr12.1530 rna-evm.model.Chr12.1530 Chr12 48307445 48308748 PREDICTED: Complement C1q tumor necrosis factor-related protein 3 nan K24236

For more detailed data, you can explore the Download section to access the full dataset.